STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH08182.1Exosortase family protein XrtF. (183 aa)    
Predicted Functional Partners:
SDH08221.1
Exosortase F-associated protein.
 
     0.958
SDG67571.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.774
SDG59196.1
Hypothetical protein.
 
     0.773
SDH86348.1
Protein involved in gliding motility EpsA.
  
     0.756
SDH87730.1
O-antigen ligase like membrane protein.
  
     0.755
SDI50583.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.754
SDH87766.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.741
SDH05963.1
Hypothetical protein.
  
     0.728
SDH28747.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.728
SDI36046.1
Hypothetical protein.
  
     0.721
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.