STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG64164.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (254 aa)    
Predicted Functional Partners:
SDG64245.1
Transcriptional regulator, GntR family.
 
 
 0.911
SDI53508.1
Amino acid adenylation domain-containing protein.
  
 0.857
SDG64205.1
MFS transporter, ACS family, hexuronate transporter.
 
    0.841
SDI53412.1
Amino acid adenylation domain-containing protein.
 
 0.835
SDG96955.1
Glutamate synthase (NADH) large subunit.
     
 0.782
SDH25123.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.763
SDG64679.1
poly(beta-D-mannuronate) lyase.
 
     0.745
SDG74564.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.744
SDI38601.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.744
SDG64276.1
Alginate lyase.
 
     0.731
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.