STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG70974.1AraC-type DNA-binding protein. (295 aa)    
Predicted Functional Partners:
SDG70605.1
Tetratricopeptide repeat-containing protein.
 
    0.794
SDG77677.1
AraC-type DNA-binding protein.
 
0.784
SDG70635.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.779
SDG70489.1
Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.759
SDH02829.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.741
SDG71106.1
Regulatory protein, gntR family.
 
  
 0.741
SDI57694.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.741
SDG59478.1
Allosteric NADP-dependent malic enzyme.
  
 
 0.655
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
 
    0.620
SDG96955.1
Glutamate synthase (NADH) large subunit.
    
  0.608
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.