STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG73422.1RNA polymerase sigma-70 factor, ECF subfamily. (181 aa)    
Predicted Functional Partners:
SDG73458.1
Hypothetical protein.
  
    0.777
SDH07423.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
SDH54721.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.772
SDH23937.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.763
SDH27443.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.744
SDH35124.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.741
SDG73389.1
Hypothetical protein.
       0.693
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.612
SDI29354.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 
 0.607
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.595
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.