STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG88229.1comF family protein. (225 aa)    
Predicted Functional Partners:
SDG73624.1
DNA processing protein.
 
 
 0.922
SDG99787.1
Competence protein ComEC.
 
  
 0.866
SDI45025.1
Magnesium chelatase family protein.
 
  
 0.832
SDG88194.1
Ig-like domain-containing protein.
       0.694
SDI12449.1
DNA repair protein RadC; Belongs to the UPF0758 family.
  
    0.692
SDG68044.1
Putative endonuclease; Belongs to the UPF0102 family.
 
    0.690
SDI37503.1
Prephenate dehydrogenase.
   
  
 0.682
SDH86591.1
Lipopolysaccharide transport system ATP-binding protein.
   
    0.646
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.639
SDI28989.1
PAS domain S-box-containing protein.
  
  
 0.613
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.