STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG93313.1Tripartite ATP-independent transporter solute receptor, DctP family. (324 aa)    
Predicted Functional Partners:
SDG93224.1
TRAP transporter, DctM subunit.
 
 0.997
SDG77433.1
TRAP transporter, DctM subunit.
 
 0.989
SDG93270.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.983
SDG77480.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.932
SDG93188.1
Tagaturonate reductase.
  
    0.769
uxaC
D-glucuronate isomerase.
  
  
 0.762
kduI-2
4-deoxy-L-threo-5-hexulose uronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
       0.743
SDG93407.1
Gluconate 5-dehydrogenase.
       0.736
SDG93163.1
Altronate hydrolase.
       0.670
SDH66074.1
Na+/H+-dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
    
 0.522
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.