STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH31873.1Mechanosensitive ion channel. (306 aa)    
Predicted Functional Partners:
SDH31928.1
MerR HTH family regulatory protein.
       0.762
SDH31989.1
Curved DNA-binding protein.
       0.762
SDH32056.1
Hypothetical protein.
       0.762
SDH32166.1
Lipoprotein-releasing system permease protein.
 
     0.652
SDH32221.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
 
     0.639
SDH02871.1
Hypothetical protein.
  
     0.634
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
     0.607
SDH32280.1
WG containing repeat-containing protein.
       0.545
SDH32333.1
Hypothetical protein.
 
     0.498
SDH31808.1
Hypothetical protein.
       0.459
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.