STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH47227.116S rRNA (guanine(966)-N(2))-methyltransferase RsmD. (178 aa)    
Predicted Functional Partners:
SDH47289.1
Protein of unknown function.
  
    0.841
SDH47333.1
Hypothetical protein.
       0.822
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
  
 0.794
SDI24886.1
Protein of unknown function.
  
     0.722
SDG86927.1
Protein of unknown function.
  
    0.670
SDH73836.1
pRiA4b ORF-3-like protein.
  
     0.631
SDH09185.1
Gliding motility associated protien GldN.
  
     0.605
SDH47372.1
Exodeoxyribonuclease-5.
       0.599
SDH47414.1
Protein of unknown function.
       0.550
SDI12498.1
Hypothetical protein.
  
     0.518
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.