STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH47002.1Outer membrane protein beta-barrel domain-containing protein. (176 aa)    
Predicted Functional Partners:
SDI50240.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.681
SDG65294.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.667
SDH46967.1
Exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
    
  0.658
SDG90690.1
Hypothetical protein.
  
   0.575
SDI36046.1
Hypothetical protein.
  
     0.547
SDI57911.1
Chaperone for outer membrane proteins, Skp family.
  
 
   0.529
SDG76116.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
   0.522
SDH46903.1
Phosphohistidine phosphatase.
       0.518
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
       0.518
SDG81323.1
Outer membrane protein OmpA.
   
 
 0.477
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.