STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH79454.1Signal transducer regulating beta-lactamase production, contains metallopeptidase domain. (759 aa)    
Predicted Functional Partners:
SDH79408.1
Predicted transcriptional regulator.
 
 
  0.997
SDG92232.1
Predicted transcriptional regulator.
 
 
  0.981
SDG90477.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
  
  
 
0.941
SDG90433.1
Predicted transcriptional regulator.
 
 
  0.897
SDH24914.1
Predicted transcriptional regulator.
 
 
  0.837
SDG92200.1
BlaR1 peptidase M56.
  
  
 
0.747
SDI44795.1
Hypothetical protein.
  
     0.563
SDH79359.1
cation:H+ antiporter.
       0.538
SDI37713.1
Protein of unknown function.
  
     0.445
SDI50211.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.437
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.