STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH98459.1Hypothetical protein. (239 aa)    
Predicted Functional Partners:
SDH98422.1
Hypothetical protein; Belongs to the UPF0246 family.
       0.671
SDH98506.1
Signal transduction histidine kinase.
 
     0.625
SDH36801.1
Hypothetical protein.
  
     0.534
SDH98539.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
       0.472
SDH30624.1
Protein of unknown function.
  
     0.458
SDH74217.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.457
SDH28775.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.454
SDH74093.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.438
SDG72686.1
Hypothetical protein.
  
     0.428
SDH98371.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.417
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.