Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SDH97080.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)    
Predicted Functional Partners:
SDH97041.1
Tetratricopeptide repeat-containing protein.
 
 
   0.951
SDH97001.1
CHAT domain-containing protein.
 
    0.933
SDG62072.1
CHAT domain-containing protein.
 
    0.659
SDG61927.1
Hypothetical protein.
 
     0.625
SDH60968.1
Hypothetical protein.
  
     0.554
SDH97112.1
Hypothetical protein.
       0.531
SDG62045.1
PKD domain-containing protein.
  
     0.514
SDH52473.1
Hypothetical protein.
  
     0.475
SDG90996.1
Hypothetical protein.
  
 
   0.470
SDH59983.1
Hypothetical protein.
  
     0.460
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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