node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH72225.1 | SDH88315.1 | SAMN04489796_10410 | SAMN04489796_10566 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | 0.926 |
SDH72225.1 | rplA | SAMN04489796_10410 | SAMN04489796_10692 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.409 |
SDH72225.1 | rplB | SAMN04489796_10410 | SAMN04489796_107116 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.916 |
SDH72225.1 | rplC | SAMN04489796_10410 | SAMN04489796_107113 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.970 |
SDH72225.1 | rplM | SAMN04489796_10410 | SAMN04489796_10176 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.982 |
SDH72225.1 | rplO | SAMN04489796_10410 | SAMN04489796_107132 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
SDH72225.1 | rplP | SAMN04489796_10410 | SAMN04489796_107120 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.591 |
SDH72225.1 | rplV | SAMN04489796_10410 | SAMN04489796_107118 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.536 |
SDH72225.1 | rplW | SAMN04489796_10410 | SAMN04489796_107115 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.757 |
SDH88315.1 | SDH72225.1 | SAMN04489796_10566 | SAMN04489796_10410 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | 0.926 |
SDH88315.1 | rplA | SAMN04489796_10566 | SAMN04489796_10692 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.409 |
SDH88315.1 | rplB | SAMN04489796_10566 | SAMN04489796_107116 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.916 |
SDH88315.1 | rplC | SAMN04489796_10566 | SAMN04489796_107113 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.970 |
SDH88315.1 | rplM | SAMN04489796_10566 | SAMN04489796_10176 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.982 |
SDH88315.1 | rplO | SAMN04489796_10566 | SAMN04489796_107132 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
SDH88315.1 | rplP | SAMN04489796_10566 | SAMN04489796_107120 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.591 |
SDH88315.1 | rplV | SAMN04489796_10566 | SAMN04489796_107118 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.536 |
SDH88315.1 | rplW | SAMN04489796_10566 | SAMN04489796_107115 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.757 |
rplA | SDH72225.1 | SAMN04489796_10692 | SAMN04489796_10410 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | 0.409 |
rplA | SDH88315.1 | SAMN04489796_10692 | SAMN04489796_10566 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family. | 0.409 |