STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI15240.1Outer membrane receptor for ferrienterochelin and colicins. (771 aa)    
Predicted Functional Partners:
SDI15274.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
 
    0.953
SDI15310.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.891
SDI15349.1
Hypothetical protein.
 
     0.852
SDG78779.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
 
    0.790
SDG78745.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.769
SDG78709.1
Hypothetical protein.
  
     0.759
SDH35280.1
Outer membrane transport energization protein TonB.
  
  0.752
SDG59230.1
Protein TonB.
  
  0.673
SDI09082.1
Hypothetical protein.
  
  0.662
SDG63192.1
TonB protein C-terminal.
   
  0.574
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.