STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI19659.1Outer membrane receptor proteins, mostly Fe transport. (791 aa)    
Predicted Functional Partners:
SDI19621.1
Protein of unknown function.
 
     0.949
SDH35280.1
Outer membrane transport energization protein TonB.
  
  0.717
SDI19707.1
Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
      0.686
SDH52677.1
Protein of unknown function.
 
     0.644
SDI09082.1
Hypothetical protein.
  
  0.619
SDG63192.1
TonB protein C-terminal.
  
  0.581
SDI57659.1
AsmA-like C-terminal region.
  
     0.553
SDH49719.1
Membrane protein YfhO.
  
     0.523
SDI19541.1
Hypothetical protein.
       0.517
SDG59230.1
Protein TonB.
   
  0.512
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.