STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI27678.1Bacteroides conjugation system ATPase, TraG family. (800 aa)    
Predicted Functional Partners:
SDI27782.1
Hypothetical protein.
 
  
 0.964
SDI27818.1
Protein of unknown function.
 
   
 0.931
SDI27845.1
Protein of unknown function.
 
   
 0.917
SDI27945.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
  
 0.813
SDI27713.1
Hypothetical protein.
       0.785
SDI27748.1
Hypothetical protein.
       0.785
SDI27978.1
Hypothetical protein.
  
     0.774
SDI28009.1
Hypothetical protein.
  
     0.774
SDI27619.1
Hypothetical protein.
       0.773
SDI27650.1
Hypothetical protein.
       0.773
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.