STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI43325.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (297 aa)    
Predicted Functional Partners:
SDH36426.1
Phytoene/squalene synthetase.
  
 0.793
SDI46865.1
Protein of unknown function.
   
 0.744
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 0.669
SDH35206.1
Uncharacterized membrane protein YhhN.
 
     0.623
SDG59787.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
 0.602
SDG76282.1
Alkane 1-monooxygenase.
 
 
 0.598
SDI57551.1
Methyltransferase domain-containing protein.
   
 0.576
SDI43209.1
O-succinylbenzoic acid--CoA ligase.
     
 0.566
SDI43248.1
Hypothetical protein.
       0.559
SDI43288.1
O-succinylbenzoate synthase.
       0.559
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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