STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI49556.1Por secretion system C-terminal sorting domain-containing protein. (972 aa)    
Predicted Functional Partners:
SDI49610.1
CHAT domain-containing protein.
 
     0.713
SDH25858.1
Hypothetical protein.
  
  0.680
SDH60918.1
Hypothetical protein.
  
  0.549
SDH90007.1
Phosphate-selective porin O and P.
  
     0.545
SDH04654.1
Hypothetical protein.
  
  0.529
SDI22701.1
Peptidoglycan endopeptidase LytF.
  
 0.526
SDG83711.1
Hypothetical protein.
  
  0.525
SDH04615.1
Hypothetical protein.
  
  0.506
SDH88035.1
CarboxypepD_reg-like domain-containing protein.
  
 
   0.506
SDH01774.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.496
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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