STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI58400.1GH3 auxin-responsive promoter. (505 aa)    
Predicted Functional Partners:
SDG88842.1
uroporphyrinogen-III synthase.
  
     0.757
SDH56127.1
Acyl-CoA reductase (LuxC).
  
 
  0.752
SDH30119.1
Protein of unknown function.
  
     0.738
SDI21050.1
RNA polymerase Rpb6.
 
     0.736
SDI39149.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
   
 0.703
SDI33253.1
Protein of unknown function.
  
     0.660
SDG78972.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.657
SDH73257.1
Hypothetical protein.
  
     0.627
SDH07177.1
Hypothetical protein.
  
     0.621
SDI43058.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.620
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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