STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI58514.1Two component transcriptional regulator, LytTR family. (244 aa)    
Predicted Functional Partners:
SDI58562.1
Tetratricopeptide repeat-containing protein.
 
  0.921
SDH28346.1
Tetratricopeptide repeat-containing protein.
 
  0.827
SDH05142.1
TPR repeat-containing protein.
  
  0.824
SDH52718.1
Histidine kinase.
  
  0.824
SDI11253.1
Histidine kinase.
  
  0.822
SDH28956.1
Histidine kinase.
  
  0.821
SDI59850.1
Histidine kinase.
  
  0.813
SDH05095.1
Y_Y_Y domain-containing protein.
 
  0.811
SDH54511.1
Hypothetical protein.
  
  0.810
SDH05438.1
Y_Y_Y domain-containing protein.
 
  0.807
Your Current Organism:
Winogradskyella thalassocola
NCBI taxonomy Id: 262004
Other names: Bacteroidetes bacterium KMM 3907, DSM 15363, KCTC 12221, KMM 3907, LMG 22492, LMG:22492, W. thalassocola, Winogradskyella thalassocola Nedashkovskaya et al. 2005 emend. Nedashkovskaya et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.