STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG13245.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
SHG13224.1
Predicted arabinose efflux permease, MFS family.
 
     0.892
SHH29461.1
Transcriptional regulator, MarR family.
  
     0.510
SHH23012.1
Predicted kinase.
  
     0.490
SHH43951.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.445
SHG75681.1
Iron complex outermembrane recepter protein.
  
     0.411
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.