STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG16473.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
SHH74629.1
Por secretion system C-terminal sorting domain-containing protein.
 
 0.786
SHH35151.1
Hypothetical protein.
  
     0.743
SHH71344.1
SusE outer membrane protein.
  
  0.710
SHG64733.1
Hypothetical protein.
  
 
  0.673
SHF92643.1
D-alanyl-D-alanine carboxypeptidase.
  
  0.665
SHG13266.1
Protein of unknown function.
   
  0.664
SHH11344.1
Hypothetical protein.
   
  0.664
SHH88360.1
Gliding motility-associated C-terminal domain-containing protein.
   
  0.664
SHH88441.1
Collagen triple helix repeat-containing protein.
   
  0.664
SHH70848.1
Hypothetical protein.
  
     0.616
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.