STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG25033.1Phospholipase/carboxylesterase. (214 aa)    
Predicted Functional Partners:
SHF92948.1
Hypothetical protein.
     
 0.960
SHG24996.1
Dihydroorotase.
   
   0.737
SHG25015.1
Hypothetical protein.
       0.680
SHG25055.1
Hypothetical protein.
       0.594
SHH10076.1
Hypothetical protein.
  
     0.531
SHG24979.1
N-terminal double-transmembrane domain-containing protein.
       0.517
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 0.512
SHH11445.1
Do/DeqQ family serine protease.
  
   
 0.473
SHG26511.1
Hypothetical protein.
  
  
  0.457
SHH68015.1
Hypothetical protein.
  
     0.457
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.