STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH04168.1Protein of unknown function. (468 aa)    
Predicted Functional Partners:
SHG88156.1
Hypothetical protein.
  
     0.606
SHH52995.1
CarboxypepD_reg-like domain-containing protein.
  
     0.603
SHG85255.1
Heat shock protein HslJ.
  
     0.552
SHH04081.1
Putative ABC transport system permease protein.
       0.509
SHH04110.1
Putative ABC transport system permease protein.
       0.509
SHH04140.1
Putative ABC transport system ATP-binding protein.
       0.509
SHG59094.1
Signal transduction histidine kinase.
  
     0.461
SHH04020.1
Outer membrane protein.
 
     0.446
SHH04055.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.436
SHG56927.1
Starch-binding associating with outer membrane.
  
     0.419
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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