STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH01810.1linoleoyl-CoA desaturase. (364 aa)    
Predicted Functional Partners:
SHG45534.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.907
SHH01845.1
Aspartate aminotransferase.
       0.687
SHG67355.1
Beta-carotene 3-hydroxylase.
 
 
 0.676
rsmG
16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.659
SHH29347.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
 
 
 0.609
SHH81598.1
Fatty acid hydroxylase superfamily protein.
 
 
 0.607
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
  
 
 0.590
SHG15724.1
Ferredoxin, 2Fe-2S.
  
 
 0.555
SHG27868.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
  
 
 0.547
SHG86236.1
Fatty acid hydroxylase superfamily protein.
  
 
 0.547
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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