STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH16281.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
SHH16253.1
Bacteroides conjugative transposon TraJ protein.
 
     0.945
SHH16221.1
Bacteroides conjugative transposon TraK protein.
 
     0.927
SHH16162.1
Bacteroides conjugative transposon TraM protein.
 
     0.899
SHH16390.1
Protein of unknown function.
 
     0.882
SHH16107.1
Hypothetical protein.
 
     0.873
SHH16366.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.861
SHH16431.1
Protein of unknown function.
 
     0.845
SHH16135.1
Bacteroides conjugative transposon TraN protein.
 
     0.821
SHH16307.1
Hypothetical protein.
 
    
0.817
SHF90095.1
Bacteroides conjugative transposon TraJ protein.
 
     0.779
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.