STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH39901.1DNA-binding transcriptional regulator, XRE-family HTH domain. (135 aa)    
Predicted Functional Partners:
SHH62905.1
Serine/threonine-protein kinase HipA.
   
  0.746
SHH62933.1
Serine/threonine-protein kinase HipA.
   
  0.746
SHH65515.1
Serine/threonine-protein kinase HipA.
   
  0.746
SHH65543.1
Serine/threonine-protein kinase HipA.
   
  0.746
SHG25822.1
Hypothetical protein.
  
     0.539
SHF89557.1
Hypothetical protein.
  
     0.424
SHH39872.1
Hypothetical protein.
       0.412
SHH39848.1
Protein of unknown function.
       0.403
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.