STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH40703.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (222 aa)    
Predicted Functional Partners:
SHH40730.1
Tetratricopeptide repeat-containing protein.
 
  0.975
SHF95721.1
Signal transduction histidine kinase.
  
 0.966
SHG00859.1
Hypothetical protein.
  
 0.965
SHG88188.1
PAS domain S-box-containing protein.
  
 0.917
SHH40461.1
Hypothetical protein.
 
  0.895
SHH79090.1
Hypothetical protein.
 
  0.887
SHH79111.1
Tetratricopeptide repeat-containing protein.
 
  0.885
SHG54095.1
Hypothetical protein.
  
 0.798
SHH15281.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
 0.795
SHH40772.1
Hypothetical protein.
 
     0.777
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.