Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHH07006.1 | SHH60181.1 | SAMN05444481_11111 | SAMN05444481_12095 | N-acetylmuramoyl-L-alanine amidase. | L,D-transpeptidase catalytic domain. | 0.507 |
SHH07006.1 | murC | SAMN05444481_11111 | SAMN05444481_1106 | N-acetylmuramoyl-L-alanine amidase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.567 |
SHH60117.1 | SHH60181.1 | SAMN05444481_12093 | SAMN05444481_12095 | MFS transporter, NHS family, xanthosine permease. | L,D-transpeptidase catalytic domain. | 0.479 |
SHH60117.1 | cmk | SAMN05444481_12093 | SAMN05444481_12094 | MFS transporter, NHS family, xanthosine permease. | Cytidylate kinase. | 0.579 |
SHH60181.1 | SHH07006.1 | SAMN05444481_12095 | SAMN05444481_11111 | L,D-transpeptidase catalytic domain. | N-acetylmuramoyl-L-alanine amidase. | 0.507 |
SHH60181.1 | SHH60117.1 | SAMN05444481_12095 | SAMN05444481_12093 | L,D-transpeptidase catalytic domain. | MFS transporter, NHS family, xanthosine permease. | 0.479 |
SHH60181.1 | cmk | SAMN05444481_12095 | SAMN05444481_12094 | L,D-transpeptidase catalytic domain. | Cytidylate kinase. | 0.634 |
SHH60181.1 | murC | SAMN05444481_12095 | SAMN05444481_1106 | L,D-transpeptidase catalytic domain. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.471 |
cmk | SHH60117.1 | SAMN05444481_12094 | SAMN05444481_12093 | Cytidylate kinase. | MFS transporter, NHS family, xanthosine permease. | 0.579 |
cmk | SHH60181.1 | SAMN05444481_12094 | SAMN05444481_12095 | Cytidylate kinase. | L,D-transpeptidase catalytic domain. | 0.634 |
murC | SHH07006.1 | SAMN05444481_1106 | SAMN05444481_11111 | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | N-acetylmuramoyl-L-alanine amidase. | 0.567 |
murC | SHH60181.1 | SAMN05444481_1106 | SAMN05444481_12095 | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | L,D-transpeptidase catalytic domain. | 0.471 |