STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH79090.1Hypothetical protein. (583 aa)    
Predicted Functional Partners:
SHH79067.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
  0.972
SHH40703.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.887
SHG00859.1
Hypothetical protein.
  
 0.867
SHF97321.1
Two component transcriptional regulator, LuxR family.
  
  0.865
SHH53385.1
Two component transcriptional regulator, LuxR family.
  
  0.849
SHH00339.1
Two component transcriptional regulator, LuxR family.
  
  0.847
SHG86944.1
Two component transcriptional regulator, LuxR family.
  
  0.844
SHG88188.1
PAS domain S-box-containing protein.
  
 0.832
SHG85411.1
Two component transcriptional regulator, LuxR family.
  
  0.828
SHH78976.1
Two component transcriptional regulator, LuxR family.
  
  0.806
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.