STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH79712.1DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (447 aa)    
Predicted Functional Partners:
SHF98500.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.963
SHG00859.1
Hypothetical protein.
 
0.949
SHF95721.1
Signal transduction histidine kinase.
 
 0.927
SHG88188.1
PAS domain S-box-containing protein.
 
 0.911
SHH15281.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
 0.874
SHH87586.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
 
 0.835
SHG29078.1
Hypothetical protein.
  
 0.762
SHG42372.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.708
SHG54594.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.696
SHG15473.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.695
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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