STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH82178.1Sugar (Glycoside-Pentoside-Hexuronide) transporter. (477 aa)    
Predicted Functional Partners:
SHH82200.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
    0.898
SHH82163.1
Endo-1,4-beta-xylanase.
 
     0.773
SHH82236.1
alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
    0.665
SHH82090.1
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
     0.545
SHH82218.1
Hypothetical protein.
       0.543
SHH82142.1
Glycosyl hydrolase family 115.
 
     0.527
SHH82279.1
Xylulokinase.
 
  
 0.450
SHH82436.1
Sialate O-acetylesterase; Belongs to the glycosyl hydrolase 2 family.
 
     0.450
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
    
  0.436
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.434
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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