STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH87423.1Hypothetical protein. (118 aa)    
Predicted Functional Partners:
SHH14162.1
Calcineurin-like phosphoesterase.
  
     0.601
SHG84055.1
Calcineurin-like phosphoesterase.
  
     0.587
SHH87402.1
Doubled CXXCH domain-containing protein.
       0.551
SHH63644.1
Hypothetical protein.
  
     0.540
SHH87475.1
Exonuclease RecJ.
       0.503
SHG11103.1
CarboxypepD_reg-like domain-containing protein.
  
     0.479
SHH87458.1
Transmembrane secretion effector.
       0.475
SHH09372.1
Hypothetical protein.
  
     0.472
SHH87437.1
Proline iminopeptidase.
       0.470
SHG06377.1
Hypothetical protein.
  
     0.451
Your Current Organism:
Flavobacterium frigidimaris
NCBI taxonomy Id: 262320
Other names: Cytophaga sp. KUC-1, DSM 15937, F. frigidimaris, Flavobacterium frigidimaris Nogi et al. 2005, JCM 12218, strain KUC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.