STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN89283.1SMP-30/Gluconolaconase/LRE-like region family protein. (307 aa)    
Predicted Functional Partners:
ALN89284.1
2-keto-3-deoxy-galactonokinase family protein.
 
     0.926
dgoD
Galactonate dehydratase; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
 
   
 0.895
ALN89281.1
Hypothetical protein.
 
     0.866
ALN89280.1
Short chain dehydrogenase family protein.
  
    0.753
ALN89279.1
Beta galactosidase small chain family protein.
       0.752
ALN90636.1
2-keto-3-deoxy-galactonokinase family protein.
 
     0.682
dgoK
2-oxo-3-deoxygalactonate kinase.
 
     0.656
ALN89287.1
Aldose 1-epimerase family protein.
 
   
 0.645
sglT-2
Sodium/glucose cotransporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.592
ALN89278.1
tonB-dependent receptor family protein.
       0.548
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
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