Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALN89352.1 | ALN90140.1 | LG3211_0362 | LG3211_1164 | Hypothetical protein. | Hypothetical protein. | 0.657 |
ALN89352.1 | ALN93053.1 | LG3211_0362 | LG3211_4117 | Hypothetical protein. | Type II secretion system (T2SS), M subtype b family protein. | 0.577 |
ALN89986.1 | ALN90140.1 | LG3211_1009 | LG3211_1164 | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Hypothetical protein. | 0.633 |
ALN89986.1 | ALN91248.1 | LG3211_1009 | LG3211_2281 | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Ribonucleotide reductase, barrel domain protein. | 0.900 |
ALN89986.1 | ALN93336.1 | LG3211_1009 | LG3211_4402 | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.900 |
ALN90139.1 | ALN90140.1 | LG3211_1163 | LG3211_1164 | L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Hypothetical protein. | 0.568 |
ALN90140.1 | ALN89352.1 | LG3211_1164 | LG3211_0362 | Hypothetical protein. | Hypothetical protein. | 0.657 |
ALN90140.1 | ALN89986.1 | LG3211_1164 | LG3211_1009 | Hypothetical protein. | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.633 |
ALN90140.1 | ALN90139.1 | LG3211_1164 | LG3211_1163 | Hypothetical protein. | L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.568 |
ALN90140.1 | ALN91248.1 | LG3211_1164 | LG3211_2281 | Hypothetical protein. | Ribonucleotide reductase, barrel domain protein. | 0.701 |
ALN90140.1 | ALN93053.1 | LG3211_1164 | LG3211_4117 | Hypothetical protein. | Type II secretion system (T2SS), M subtype b family protein. | 0.601 |
ALN90140.1 | ALN93334.1 | LG3211_1164 | LG3211_4400 | Hypothetical protein. | TSCPD domain protein; '[F] COG0209 Ribonucleotide reductase, alpha subunit'. | 0.685 |
ALN90140.1 | ALN93336.1 | LG3211_1164 | LG3211_4402 | Hypothetical protein. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.676 |
ALN90140.1 | gntY | LG3211_1164 | LG3211_2931 | Hypothetical protein. | Iron-sulfur cluster scaffold protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.664 |
ALN90140.1 | grxD | LG3211_1164 | LG3211_0573 | Hypothetical protein. | Monothiol glutaredoxin, Grx4 family. | 0.792 |
ALN90140.1 | msrA | LG3211_1164 | LG3211_1401 | Hypothetical protein. | Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.713 |
ALN91248.1 | ALN89986.1 | LG3211_2281 | LG3211_1009 | Ribonucleotide reductase, barrel domain protein. | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.900 |
ALN91248.1 | ALN90140.1 | LG3211_2281 | LG3211_1164 | Ribonucleotide reductase, barrel domain protein. | Hypothetical protein. | 0.701 |
ALN91248.1 | ALN93334.1 | LG3211_2281 | LG3211_4400 | Ribonucleotide reductase, barrel domain protein. | TSCPD domain protein; '[F] COG0209 Ribonucleotide reductase, alpha subunit'. | 0.763 |
ALN91248.1 | ALN93336.1 | LG3211_2281 | LG3211_4402 | Ribonucleotide reductase, barrel domain protein. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.929 |
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