STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN90271.1Acetyltransferase family protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (178 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase, SufS family protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.810
ALN90273.1
Cupin domain protein.
       0.773
sufD
feS assembly protein SufD.
       0.773
sufC
feS assembly ATPase SufC.
       0.675
ALN90276.1
Hypothetical protein.
       0.632
bnzC
Benzene 1,2-dioxygenase system ferredoxin subunit.
 
     0.558
ALN90277.1
Hypothetical protein.
       0.513
ALN90411.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.507
sufB
feS assembly protein SufB; '[O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component'.
       0.480
ALN90279.1
feS assembly SUF system regulator.
       0.460
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
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