STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaZPolyhydroxyalkanoate depolymerase, intracellular family protein. (416 aa)    
Predicted Functional Partners:
phaC
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit.
 
  
 0.949
ALN91816.1
3HB-oligomer hydrolase family protein.
  
  
  0.917
phaE
poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit.
   
 
  0.900
phaR
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.560
ALN93638.1
Hypothetical protein.
  
     0.520
ALN93636.1
Hypothetical protein.
  
     0.492
ALN93639.1
Hypothetical protein.
  
     0.491
ALN91525.1
Gram-negative porin family protein.
  
     0.458
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.