STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN91305.1Response regulator. (352 aa)    
Predicted Functional Partners:
rpfC
Sensory/regulatory protein rpfC.
 0.996
crp
CRP transcriptional dual regulator.
    
 0.955
ALN90541.1
Diguanylate cyclase domain protein.
  
 0.930
ALN89671.1
Cyclic nucleotide-binding domain protein.
    
 0.914
ALN92653.1
Cyclic nucleotide-binding domain protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
    
 0.910
wspR
Response regulator.
  
0.884
ALN91977.1
Diguanylate cyclase domain protein.
 
  
 0.805
ALN90836.1
Diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.
  
 0.791
ALN90751.1
Diguanylate cyclase domain protein.
   
 0.757
ALN89390.1
Diguanylate cyclase domain protein.
 
 
 0.737
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
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