Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALN89390.1 | ALN90541.1 | LG3211_0400 | LG3211_1565 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein. | 0.594 |
ALN89390.1 | ALN90751.1 | LG3211_0400 | LG3211_1777 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein. | 0.694 |
ALN89390.1 | ALN90836.1 | LG3211_0400 | LG3211_1866 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. | 0.798 |
ALN89390.1 | ALN91305.1 | LG3211_0400 | LG3211_2338 | Diguanylate cyclase domain protein. | Response regulator. | 0.737 |
ALN89390.1 | wspR | LG3211_0400 | LG3211_2461 | Diguanylate cyclase domain protein. | Response regulator. | 0.411 |
ALN89671.1 | ALN91305.1 | LG3211_0688 | LG3211_2338 | Cyclic nucleotide-binding domain protein. | Response regulator. | 0.914 |
ALN89671.1 | ALN92653.1 | LG3211_0688 | LG3211_3711 | Cyclic nucleotide-binding domain protein. | Cyclic nucleotide-binding domain protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. | 0.931 |
ALN89671.1 | crp | LG3211_0688 | LG3211_4210 | Cyclic nucleotide-binding domain protein. | CRP transcriptional dual regulator. | 0.923 |
ALN90541.1 | ALN89390.1 | LG3211_1565 | LG3211_0400 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein. | 0.594 |
ALN90541.1 | ALN90751.1 | LG3211_1565 | LG3211_1777 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein. | 0.654 |
ALN90541.1 | ALN90836.1 | LG3211_1565 | LG3211_1866 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. | 0.974 |
ALN90541.1 | ALN91305.1 | LG3211_1565 | LG3211_2338 | Diguanylate cyclase domain protein. | Response regulator. | 0.930 |
ALN90541.1 | rpfC | LG3211_1565 | LG3211_2339 | Diguanylate cyclase domain protein. | Sensory/regulatory protein rpfC. | 0.451 |
ALN90541.1 | wspR | LG3211_1565 | LG3211_2461 | Diguanylate cyclase domain protein. | Response regulator. | 0.512 |
ALN90751.1 | ALN89390.1 | LG3211_1777 | LG3211_0400 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein. | 0.694 |
ALN90751.1 | ALN90541.1 | LG3211_1777 | LG3211_1565 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein. | 0.654 |
ALN90751.1 | ALN90836.1 | LG3211_1777 | LG3211_1866 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain. | 0.885 |
ALN90751.1 | ALN91305.1 | LG3211_1777 | LG3211_2338 | Diguanylate cyclase domain protein. | Response regulator. | 0.757 |
ALN90751.1 | ALN91977.1 | LG3211_1777 | LG3211_3015 | Diguanylate cyclase domain protein. | Diguanylate cyclase domain protein. | 0.514 |
ALN90751.1 | wspR | LG3211_1777 | LG3211_2461 | Diguanylate cyclase domain protein. | Response regulator. | 0.563 |
page 1 of 3