STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN91525.1Gram-negative porin family protein. (450 aa)    
Predicted Functional Partners:
ALN89074.1
vacJ like lipofamily protein.
   
 
 0.800
ALN92037.1
WD40-like Beta Propeller Repeat family protein.
    
 
 0.696
tolB
tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.696
ALN93639.1
Hypothetical protein.
  
     0.655
ALN93638.1
Hypothetical protein.
  
     0.636
ALN93636.1
Hypothetical protein.
  
     0.626
ALN91526.1
Putative phosphonoacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.601
ALN93451.1
Rhodanese-like domain protein.
  
     0.560
ALN90288.1
PIN domain protein.
  
     0.472
ALN91527.1
Major Facilitator Superfamily protein.
       0.462
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
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