STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN91946.1HTH-like domain protein. (125 aa)    
Predicted Functional Partners:
ALN91947.1
Transposase family protein.
 
     0.915
ALN91941.1
Integrase core domain protein.
 
     0.806
ALN93785.1
Transposase family protein.
     0.803
ALN91942.1
Transposase family protein.
 
     0.770
ALN92642.1
Integrase core domain protein.
  
     0.745
ALN92641.1
Transposase family protein.
 
     0.711
ALN91945.1
Phage portal family protein.
       0.542
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.