STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN92158.1tonB dependent receptor family protein; '[P] COG1629 Outer membrane receptor proteins, mostly Fe transport'. (830 aa)    
Predicted Functional Partners:
ALN90104.1
tonB dependent receptor family protein.
  
     0.749
ALN89754.1
tonB dependent receptor family protein.
  
    0.716
ALN93759.1
tonB dependent receptor family protein.
  
    0.712
ALN93900.1
tonB dependent receptor family protein.
  
    0.711
ALN93761.1
tonB dependent receptor family protein; '[P] COG1629 Outer membrane receptor proteins, mostly Fe transport'.
  
     0.697
ALN90105.1
tonB dependent receptor family protein; '[P] COG1629 Outer membrane receptor proteins, mostly Fe transport'.
  
    0.644
ALN89259.1
fecR family protein.
 
  
 0.636
ALN94091.1
Outer membrane insertion C-terminal signal domain protein.
  
     0.628
ALN94089.1
tonB dependent receptor family protein.
  
     0.619
ALN89275.1
fecR family protein; '[PT] COG3712 Fe2+-dicitrate sensor, membrane component'.
 
    0.617
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
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