STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN92998.1Type II secretion system (T2SS), F family protein. (397 aa)    
Predicted Functional Partners:
pilB
'[NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB'.
 
 
 0.989
ALN92999.1
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.983
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.943
ALN89951.1
'[NU] COG4972 Tfp pilus assembly protein, ATPase PilM'.
 
 
 
 0.871
pilQ
Type IV pilus secretin PilQ family protein; '[U] COG4796 Type II secretory pathway, component HofQ'.
 
 
 
 0.871
ALN90187.1
Twitching motility family protein; '[NU] COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT'.
 
  
 0.870
ALN90188.1
Twitching motility family protein.
 
   
 0.809
ALN93132.1
Twitching motility family protein.
 
   
 0.794
pilO
pilO protein.
 
 
 
 0.774
ALN89952.1
[NU] COG3166 Tfp pilus assembly protein PilN.
 
 
 
 0.771
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
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