STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
danD-aminoacylase. (489 aa)    
Predicted Functional Partners:
ALN93504.1
Putative D-serine deaminase (D-serine dehydratase) protein.
 
   
 0.947
ALN93503.1
3-oxoacyl-[acyl-carrier-protein]reductase.
 
     0.795
ALN93505.1
Helix-turn-helix domain, rpiR family protein.
       0.785
dgoK
2-oxo-3-deoxygalactonate kinase.
       0.785
ALN93508.1
KDPG and KHG aldolase family protein.
       0.783
ALN93502.1
Hypothetical protein.
 
     0.780
ALN92558.1
Amidohydrolase family protein.
 
     0.688
ALN93501.1
Hypothetical protein; '[J] COG0251 Putative translation initiation inhibitor, yjgF family'.
 
     0.488
nagA-2
alpha-N-acetylgalactosaminidase.
 
     0.406
Your Current Organism:
Lysobacter gummosus
NCBI taxonomy Id: 262324
Other names: ATCC 29489, DSM 6980, KCTC 12132, L. gummosus, LMG 8763, LMG:8763, Lysobacter sp. OeWu101, UASM 402
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.