STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Exig_1360PFAM: regulatory protein MarR; KEGG: cpr:CPR_0773 transcriptional regulator, MarR family. (145 aa)    
Predicted Functional Partners:
Exig_1359
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bsu:BSU26470 hypothetical protein.
       0.619
Exig_1361
KEGG: btk:BT9727_0997 hypothetical protein.
       0.603
Exig_1358
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bce:BC1711 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.532
Exig_1362
PFAM: major facilitator superfamily MFS_1; KEGG: bcl:ABC1998 hypothetical protein.
       0.411
Your Current Organism:
Exiguobacterium sibiricum
NCBI taxonomy Id: 262543
Other names: E. sibiricum 255-15, Exiguobacterium sibiricum 255-15, Exiguobacterium sibiricum str. 255-15, Exiguobacterium sibiricum strain 255-15, Exiguobacterium sp. 255-15, Exiguobacterium strain 255-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.