Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Exig_2017KEGG: ssp:SSP1704 cytochrome bd-type quinol oxidase subunit 2. (340 aa)    
Predicted Functional Partners:
Exig_2018
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: oih:OB1050 cytochrome d ubiquinol oxidase subunit I.
 
 0.999
Exig_0176
KEGG: oih:OB1047 ABC transporter ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
  
 0.922
Exig_0177
KEGG: bha:BH3972 ABC transporter required for expression of cytochrome bd (ATP-binding protein); TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.915
Exig_2156
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: bpu:BPUM_2501 succinate dehydrogenase iron-sulfur protein subunit.
  
  
 0.727
Exig_2324
PFAM: protein of unknown function DUF86; KEGG: bha:BH3430 hypothetical protein.
  
     0.712
Exig_2157
KEGG: bld:BLi02993 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.704
Exig_1105
PFAM: protein of unknown function DUF1453; KEGG: bld:BLi02042 YneJ.
  
     0.700
Exig_0245
PFAM: Protein of unknown function YwhD; KEGG: bha:BH3813 hypothetical protein.
  
     0.674
Exig_2158
TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: gka:GK2673 succinate dehydrogenase (cytochrome b558 subunit).
  
   
 0.613
Exig_1022
KEGG: bpu:BPUM_1594 hypothetical protein.
  
     0.612
Your Current Organism:
Exiguobacterium sibiricum
NCBI taxonomy Id: 262543
Other names: E. sibiricum 255-15, Exiguobacterium sibiricum 255-15, Exiguobacterium sibiricum str. 255-15, Exiguobacterium sibiricum strain 255-15, Exiguobacterium sp. 255-15, Exiguobacterium strain 255-15
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