Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Exig_2467TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bcy:Bcer98_3733 DegV family protein. (281 aa)    
Predicted Functional Partners:
Exig_1915
PFAM: Dak phosphatase; KEGG: bpu:BPUM_1483 glycerone kinase.
 
 0.991
Exig_2465
KEGG: gtn:GTNG_3071 competence protein F.
       0.502
Exig_2466
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: bcl:ABC3084 late competence protein ComFA.
       0.502
Exig_1916
PFAM: protein of unknown function DUF322; KEGG: bay:RBAM_015660 YloU.
 
    0.501
Exig_2468
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bha:BH3628 two-component response regulator involved in degradative enzyme.
       0.490
Exig_2469
Histidine kinase; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
       0.490
Exig_2464
KEGG: gtn:GTNG_3065 flagellar protein.
       0.434
rex
CoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
   
 0.412
Your Current Organism:
Exiguobacterium sibiricum
NCBI taxonomy Id: 262543
Other names: E. sibiricum 255-15, Exiguobacterium sibiricum 255-15, Exiguobacterium sibiricum str. 255-15, Exiguobacterium sibiricum strain 255-15, Exiguobacterium sp. 255-15, Exiguobacterium strain 255-15
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