STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Exig_2575PFAM: lipopolysaccharide biosynthesis protein; KEGG: bld:BLi03855 YwqC. (216 aa)    
Predicted Functional Partners:
Exig_2637
TIGRFAM: capsular exopolysaccharide family; KEGG: bha:BH3668 capsular polysaccharide biosynthesis.
 
 
 0.926
Exig_2636
Protein-tyrosine-phosphatase; PFAM: PHP domain protein; KEGG: bha:BH3667 capsular polysaccharide biosynthesis.
 
 
 0.905
Exig_2567
PFAM: sugar transferase; KEGG: ftn:FTN_1429 galactosyl transferase.
 
  
 0.902
Exig_2574
Polysaccharide biosynthesis protein CapD; PFAM: UBA/THIF-type NAD/FAD binding protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: bha:BH3718 capsular polysaccharide biosynthesis.
 
  
 0.836
Exig_2633
PFAM: sugar transferase; KEGG: cpy:Cphy_3507 sugar transferase.
 
  
 0.765
Exig_2573
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rrs:RoseRS_3640 polysaccharide biosynthesis protein.
  
  
 0.759
Exig_2565
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bwe:BcerKBAB4_3387 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.739
Exig_2568
PFAM: glycosyl transferase group 1; KEGG: amr:AM1_4829 glycosyl transferase, group 1, putative.
 
  
 0.733
Exig_2571
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: hha:Hhal_2179 NAD-dependent epimerase/dehydratase.
  
    0.690
Exig_2572
KEGG: par:Psyc_0669 hypothetical protein.
  
    0.690
Your Current Organism:
Exiguobacterium sibiricum
NCBI taxonomy Id: 262543
Other names: E. sibiricum 255-15, Exiguobacterium sibiricum 255-15, Exiguobacterium sibiricum str. 255-15, Exiguobacterium sibiricum strain 255-15, Exiguobacterium sp. 255-15, Exiguobacterium strain 255-15
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