Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SC1_00197 | SC1_00198 | higA protein. | ABC transporter ATP-binding protein. | 0.543 |
SC1_00197 | SC1_00199 | higA protein. | Hypothetical protein. | 0.415 |
SC1_00197 | SC1_00201 | higA protein. | Regulatory sensor-transducer, BlaR1/MecR1 family. | 0.559 |
SC1_00198 | SC1_00197 | ABC transporter ATP-binding protein. | higA protein. | 0.543 |
SC1_00198 | SC1_00199 | ABC transporter ATP-binding protein. | Hypothetical protein. | 0.572 |
SC1_00199 | SC1_00197 | Hypothetical protein. | higA protein. | 0.415 |
SC1_00199 | SC1_00198 | Hypothetical protein. | ABC transporter ATP-binding protein. | 0.572 |
SC1_00199 | SC1_00200 | Hypothetical protein. | Transcriptional repressor, BlaI/MecI family. | 0.404 |
SC1_00199 | SC1_00201 | Hypothetical protein. | Regulatory sensor-transducer, BlaR1/MecR1 family. | 0.404 |
SC1_00200 | SC1_00199 | Transcriptional repressor, BlaI/MecI family. | Hypothetical protein. | 0.404 |
SC1_00200 | SC1_00201 | Transcriptional repressor, BlaI/MecI family. | Regulatory sensor-transducer, BlaR1/MecR1 family. | 0.974 |
SC1_00201 | SC1_00197 | Regulatory sensor-transducer, BlaR1/MecR1 family. | higA protein. | 0.559 |
SC1_00201 | SC1_00199 | Regulatory sensor-transducer, BlaR1/MecR1 family. | Hypothetical protein. | 0.404 |
SC1_00201 | SC1_00200 | Regulatory sensor-transducer, BlaR1/MecR1 family. | Transcriptional repressor, BlaI/MecI family. | 0.974 |