Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SC1_00097 | SC1_00329 | Eukaryotic translation initiation factor 3 subunit 10. | Cell wall hydrolyses; Involved in spore germination. | 0.551 |
SC1_00097 | SC1_00700 | Eukaryotic translation initiation factor 3 subunit 10. | Iron-sulfur cluster assembly scaffold protein IscU. | 0.430 |
SC1_00097 | SC1_03860 | Eukaryotic translation initiation factor 3 subunit 10. | LSU ribosomal protein L21p. | 0.455 |
SC1_00328 | SC1_00329 | Glyoxalase family protein. | Cell wall hydrolyses; Involved in spore germination. | 0.643 |
SC1_00328 | SC1_00330 | Glyoxalase family protein. | Hypothetical protein. | 0.434 |
SC1_00329 | SC1_00097 | Cell wall hydrolyses; Involved in spore germination. | Eukaryotic translation initiation factor 3 subunit 10. | 0.551 |
SC1_00329 | SC1_00328 | Cell wall hydrolyses; Involved in spore germination. | Glyoxalase family protein. | 0.643 |
SC1_00329 | SC1_00330 | Cell wall hydrolyses; Involved in spore germination. | Hypothetical protein. | 0.513 |
SC1_00329 | SC1_00553 | Cell wall hydrolyses; Involved in spore germination. | Hypothetical protein; FIG00635924. | 0.499 |
SC1_00329 | SC1_00700 | Cell wall hydrolyses; Involved in spore germination. | Iron-sulfur cluster assembly scaffold protein IscU. | 0.594 |
SC1_00329 | SC1_01113 | Cell wall hydrolyses; Involved in spore germination. | Muramoyltetrapeptide carboxypeptidase. | 0.491 |
SC1_00329 | SC1_02133 | Cell wall hydrolyses; Involved in spore germination. | ATP synthase F0 sector subunit c. | 0.495 |
SC1_00329 | SC1_02423 | Cell wall hydrolyses; Involved in spore germination. | Hypothetical protein; FIG00635979. | 0.604 |
SC1_00329 | SC1_02950 | Cell wall hydrolyses; Involved in spore germination. | Signal transduction histidine kinase. | 0.565 |
SC1_00329 | SC1_03860 | Cell wall hydrolyses; Involved in spore germination. | LSU ribosomal protein L21p. | 0.488 |
SC1_00330 | SC1_00328 | Hypothetical protein. | Glyoxalase family protein. | 0.434 |
SC1_00330 | SC1_00329 | Hypothetical protein. | Cell wall hydrolyses; Involved in spore germination. | 0.513 |
SC1_00553 | SC1_00329 | Hypothetical protein; FIG00635924. | Cell wall hydrolyses; Involved in spore germination. | 0.499 |
SC1_00553 | SC1_00700 | Hypothetical protein; FIG00635924. | Iron-sulfur cluster assembly scaffold protein IscU. | 0.501 |
SC1_00553 | SC1_02133 | Hypothetical protein; FIG00635924. | ATP synthase F0 sector subunit c. | 0.426 |
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