STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_00452Phosphodiesterase/alkaline phosphatase D. (543 aa)    
Predicted Functional Partners:
SC1_02342
Secreted alkaline phosphatase.
  
  
 
0.904
folE
GTP cyclohydrolase I.
    
 0.720
folE-2
GTP cyclohydrolase I.
    
 0.720
SC1_00121
3-phytase.
 
  
 0.705
SC1_00403
Dihydroneopterin aldolase.
     
 0.640
SC1_00608
Glycerophosphoryl diester phosphodiesterase.
 
 
 0.632
SC1_00451
Hypothetical protein; FIG00636829.
       0.609
SC1_00122
Purple acid phosphatase.
    
  0.501
SC1_03804
Glycerophosphoryl diester phosphodiesterase.
 
 
 0.440
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.